Package: scCustomize
Type: Package
Title: Custom Visualizations & Functions for Streamlined Analyses of
        Single Cell Sequencing
Description: Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'.  'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions.  For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.
Version: 3.0.1
Date: 2024-12-18
Authors@R: c(
    person(given = "Samuel", family = "Marsh", email = "samuel.marsh@childrens.harvard.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3012-6945")),
    person(given = "Ming", family = "Tang", role = c("ctb"), email = "tangming2005@gmail.com"),
    person(given = 'Velina', family = 'Kozareva', role = c('ctb')),
    person("Lucas", "Graybuck", email = "lucasg@alleninstitute.org", role = c('ctb'))
    )
URL: https://github.com/samuel-marsh/scCustomize,
        https://samuel-marsh.github.io/scCustomize/,
        https://doi.org/10.5281/zenodo.5706431
BugReports: https://github.com/samuel-marsh/scCustomize/issues
Depends: R (>= 4.0.0), Seurat (>= 4.3.0.1)
Imports: circlize, cli (>= 3.2.0), cowplot, data.table, dplyr, forcats,
        ggbeeswarm, ggplot2, ggprism, ggrastr, ggrepel, glue,
        grDevices, grid, janitor, lifecycle, magrittr, Matrix (>=
        1.5.0), methods, paletteer, patchwork, pbapply, purrr, rlang
        (>= 1.1.3), scales, scattermore (>= 1.2), SeuratObject (>=
        5.0.0), stats, stringi, stringr, tibble, tidyr
Suggests: BiocFileCache, ComplexHeatmap, dittoSeq, DropletUtils,
        ggpubr, hdf5r, knitr, Nebulosa, remotes, reticulate, rliger,
        rmarkdown, scuttle, tidyselect, qs, viridis
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2024-12-18 18:18:38 UTC; marsh_mbp
Author: Samuel Marsh [aut, cre] (<https://orcid.org/0000-0002-3012-6945>),
  Ming Tang [ctb],
  Velina Kozareva [ctb],
  Lucas Graybuck [ctb]
Maintainer: Samuel Marsh <samuel.marsh@childrens.harvard.edu>
Repository: CRAN
Date/Publication: 2024-12-18 18:40:02 UTC
Built: R 4.5.0; ; 2025-04-02 16:32:15 UTC; unix
