brainGraph-package	brainGraph
aal116	brain_atlases
aal2.120	brain_atlases
aal2.94	brain_atlases
aal90	brain_atlases
add_nans	glm_helpers
analysis_random_graphs	random_graphs
anova.bg_GLM	glm_stats
aop	individ_contrib
apply_thresholds	apply_thresholds
as_atlas	atlas_helpers
as_brainGraphList	brainGraphList
Atlas Helpers	atlas_helpers
Attributes	attributes
auc_diff	auc_diff
bg_to_mediate	mediation
Bootstrapping	Bootstrapping
Brain Atlases	brain_atlases
brainGraph	brainGraph
brainGraph-methods	brainGraph-methods
brainGraph-options	brainGraph
brainGraphList	brainGraphList
brainGraph_boot	Bootstrapping
brainGraph_GLM	glm
brainGraph_GLM_design	glm_design
brainGraph_mediate	mediation
brainGraph_permute	brainGraph_permute
brainnetome	brain_atlases
brainsuite	brain_atlases
case.names.bg_GLM	glm_info
case.names.brainGraph_resids	residuals
case.names.mtpc	mtpc
case.names.NBS	NBS
centr_betw_comm	centr_betw_comm
centr_lev	centr_lev
check_degree	check_attributes
check_if_singular	glm_helpers
check_sID	pad_zeros
check_strength	check_attributes
check_weights	check_attributes
choose.edges	choose.edges
coef.bg_GLM	glm_stats
coeff_determ	glm_stats
coeff_table	glm_stats
coeff_var	coeff_var
coeff_var.default	coeff_var
colMax	matrix_utils
colMaxAbs	matrix_utils
colMin	matrix_utils
communicability	communicability
confint.bg_GLM	glm_stats
contract_brainGraph	contract_brainGraph
contrast_names	glm_helpers
cooks.distance.bg_GLM	glm_influence
cor.diff.test	cor.diff.test
corr.matrix	correlation_matrices
Count Edges	count_edges
count_homologous	count_edges
count_inter	count_edges
covratio.bg_GLM	glm_influence
craddock200	brain_atlases
create_atlas	atlas_helpers
create_mats	create_mats
Creating_Graphs	make_brainGraph
Creating_Graphs_GLM	glm_brainGraphList
cxtxfun_3d	glm_helpers
delete_all_attr	delete_all_attr
destrieux	brain_atlases
destrieux.scgm	brain_atlases
deviance.bg_GLM	glm_stats
df.residual.bg_GLM	glm_stats
df.residual.mtpc	mtpc
df.residual.NBS	NBS
dfbeta.bg_GLM	glm_influence
dfbetas.bg_GLM	glm_influence
dffits.bg_GLM	glm_influence
diag_sq	matrix_utils
dir2files	dir2files
dk	brain_atlases
dk.scgm	brain_atlases
dkt	brain_atlases
dkt.scgm	brain_atlases
dosenbach160	brain_atlases
edge_asymmetry	edge_asymmetry
edge_spatial_dist	spatial_dist
efficiency	efficiency
Extract.brainGraphList	brainGraphList
Extract.brainGraph_resids	residuals
Extract.corr_mats	correlation_matrices
extractAIC.bg_GLM	glm_model_select
fastLmBG	glm_fit
fastLmBG_3d	glm_fit
fastLmBG_3dY	glm_fit
fastLmBG_3dY_1p	glm_fit
fastLmBG_f	glm_fit
fastLmBG_t	glm_fit
fitted.bg_GLM	glm_stats
formula.bg_GLM	glm_info
formula.mtpc	mtpc
formula.NBS	NBS
gateway_coeff	vertex_roles
get.resid	residuals
get_metadata	utils
get_rand_attrs	get_rand_attrs
get_thresholds	matrix_utils
GLM	glm
GLM basic info	glm_info
GLM design	glm_design
GLM fits	glm_fit
GLM helpers	glm_helpers
GLM influence measures	glm_influence
GLM model selection	glm_model_select
GLM statistics	glm_stats
glm_data_table	glm_helpers
gordon333	brain_atlases
Graph Data Tables	data_tables
Graph Distances	spatial_dist
graph_attr_dt	data_tables
groups.brainGraphList	brainGraph-methods
groups.brainGraph_resids	residuals
groups.corr_mats	brainGraph-methods
guess_atlas	atlas_helpers
hatvalues.bg_GLM	glm_influence
hcp_mmp1.0	brain_atlases
hoa112	brain_atlases
hubness	hubness
import_scn	import_scn
IndividualContributions	individ_contrib
influence.bg_GLM	glm_influence
inv	inverse
inv.array	inverse
inv.list	inverse
inv.matrix	inverse
inv.qr	inverse
Inverse	inverse
is.brainGraph	make_brainGraph
is.brainGraphList	brainGraphList
is_binary	matrix_utils
labels.bg_GLM	glm_info
labels.mtpc	mtpc
labels.NBS	NBS
logLik.bg_GLM	glm_model_select
loo	individ_contrib
lpba40	brain_atlases
make_auc_brainGraph	make_auc_brainGraph
make_brainGraph	make_brainGraph
make_brainGraph.bg_mediate	make_brainGraph
make_brainGraph.igraph	make_brainGraph
make_brainGraph.matrix	make_brainGraph
make_brainGraphList	brainGraphList
make_brainGraphList.array	brainGraphList
make_brainGraphList.bg_GLM	glm_brainGraphList
make_brainGraphList.corr_mats	brainGraphList
make_brainGraphList.mtpc	glm_brainGraphList
make_brainGraphList.NBS	glm_brainGraphList
make_ego_brainGraph	make_ego_brainGraph
make_empty_brainGraph	make_brainGraph
make_intersection_brainGraph	make_intersection_brainGraph
Matrix utilities	matrix_utils
matrix2list	glm_helpers
maxfun	glm_helpers
mean_distance_wt	mean_distance_wt
Mediation	mediation
mtpc	mtpc
NBS	NBS
nobs.bg_GLM	glm_info
nobs.brainGraphList	brainGraphList
nobs.brainGraph_resids	residuals
nobs.mtpc	mtpc
nobs.NBS	NBS
nregions	brainGraph-methods
nregions.bg_GLM	glm_info
nregions.brainGraph_resids	residuals
nregions.corr_mats	correlation_matrices
nregions.mtpc	mtpc
nregions.NBS	NBS
outer_vec	utils
pad_zeros	pad_zeros
partition	randomise
part_coeff	vertex_roles
pinv	inverse
plot.bg_GLM	glm
plot.brainGraph	plot.brainGraph
plot.brainGraphList	plot.brainGraphList
plot.brainGraph_boot	Bootstrapping
plot.brainGraph_GLM	glm_graph_plots
plot.brainGraph_mediate	glm_graph_plots
plot.brainGraph_mtpc	glm_graph_plots
plot.brainGraph_NBS	glm_graph_plots
plot.brainGraph_permute	brainGraph_permute
plot.brainGraph_resids	residuals
plot.corr_mats	correlation_matrices
plot.IC	individ_contrib
plot.mtpc	mtpc
Plotting GLM graphs	glm_graph_plots
plot_brainGraph_multi	plot_brainGraph_multi
plot_global	plot_global
plot_rich_norm	plot_rich_norm
plot_vertex_measures	plot_vertex_measures
plot_volumetric	plot_volumetric
power264	brain_atlases
print.bg_GLM	glm
print.brainGraphList	brainGraphList
qr.array	matrix_utils
qr_Q2	matrix_utils
qr_R2	matrix_utils
Random Graphs	random_graphs
randomise	randomise
randomise_3d	randomise
region.names	brainGraph-methods
region.names.bg_GLM	glm_info
region.names.brainGraph_resids	residuals
region.names.corr_mats	correlation_matrices
region.names.data.table	brainGraph-methods
region.names.mtpc	mtpc
rename_levels	rename_levels
Residuals	residuals
residuals.bg_GLM	glm_stats
Rich Club	rich_club
rich_club_all	rich_club
rich_club_attrs	rich_club_attrs
rich_club_coeff	rich_club
rich_club_norm	rich_club
rich_core	rich_club
robustness	robustness
rstandard.bg_GLM	glm_influence
rstudent.bg_GLM	glm_influence
setup_glm	glm_helpers
set_brainGraph_attr	attributes
set_graph_colors	set_graph_colors
sigma.bg_GLM	glm_stats
sim.rand.graph.clust	random_graphs
sim.rand.graph.hqs	random_graphs
sim.rand.graph.par	random_graphs
slicer	plot_brainGraph_multi
small.world	small.world
sortfun	glm_helpers
split_string	utils
subset_graph	subset_graph
summary.bg_GLM	glm
summary.bg_mediate	mediation
summary.brainGraph	make_brainGraph
summary.brainGraph_boot	Bootstrapping
summary.brainGraph_permute	brainGraph_permute
summary.brainGraph_resids	residuals
summary.IC	individ_contrib
summary.mtpc	mtpc
summary.NBS	NBS
symmetrize	matrix_utils
symmetrize.array	matrix_utils
symmetrize.matrix	matrix_utils
symm_mean	matrix_utils
s_core	s_core
terms.bg_GLM	glm_info
terms.mtpc	mtpc
terms.NBS	NBS
update_fs_names	update_fs_names
Utility functions	utils
variable.names.bg_GLM	glm_info
variable.names.mtpc	mtpc
variable.names.NBS	NBS
vcov.bg_GLM	glm_stats
vec.transform	utils
Vertex Roles	vertex_roles
vertex_attr_dt	data_tables
vertex_spatial_dist	spatial_dist
vif.bg_GLM	vif.bg_GLM
vulnerability	vulnerability
within_module_deg_z_score	vertex_roles
write_brainnet	write_brainnet
xfm.weights	attributes
[.bg_GLM	glm
[.brainGraphList	brainGraphList
[.brainGraph_resids	residuals
[.corr_mats	correlation_matrices
