Package: CB2
Type: Package
Title: CRISPR Pooled Screen Analysis using Beta-Binomial Test
Version: 1.3.4
Date: 2020-07-23
Authors@R: 
  c(person(given = "Hyun-Hwan", family = "Jeong", role = c("aut", "cre"), email = "jeong.hyunhwan@gmail.com"))
Description: Provides functions for hit gene identification and quantification of sgRNA (single-guided RNA) abundances for CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) pooled screen data analysis. 
  Details are in Jeong et al. (2019) <doi:10.1101/gr.245571.118> and Baggerly et al. (2003) <doi:10.1093/bioinformatics/btg173>. 
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
LazyData: true
Imports: Rcpp (>= 0.12.16), metap, magrittr, dplyr, tibble, stringr,
        ggplot2, tidyr, glue, pheatmap, tools, readr, parallel, R.utils
LinkingTo: Rcpp, RcppArmadillo
Suggests: testthat, knitr, rmarkdown
RoxygenNote: 7.1.1
Encoding: UTF-8
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2020-07-23 15:58:35 UTC; hwan
Author: Hyun-Hwan Jeong [aut, cre]
Maintainer: Hyun-Hwan Jeong <jeong.hyunhwan@gmail.com>
Repository: CRAN
Date/Publication: 2020-07-24 09:42:24 UTC
Built: R 4.2.3; x86_64-w64-mingw32; 2024-04-24 02:50:12 UTC; windows
ExperimentalWindowsRuntime: ucrt
Archs: x64
