Package: MARVEL
Title: Revealing Splicing Dynamics at Single-Cell Resolution
Version: 1.4.0
Description: Alternative splicing represents an additional and underappreciated layer of complexity underlying gene expression profiles. Nevertheless, there remains hitherto a paucity of software to investigate splicing dynamics at single-cell resolution. 'MARVEL' enables splicing analysis of single-cell RNA-sequencing data generated from plate- and droplet-based library preparation methods.
Imports: ggplot2 (>= 3.3.2), Matrix (>= 1.3-3), methods, plyr (>=
        1.8.4), scales (>= 1.1.1)
Suggests: AnnotationDbi (>= 1.48.0), Biostrings (>= 2.56.0), BSgenome
        (>= 1.56.0), BSgenome.Hsapiens.NCBI.GRCh38 (>= 1.3.1000),
        clusterProfiler (>= 3.16.0), factoextra (>= 1.0.7), FactoMineR
        (>= 2.3), fitdistrplus (>= 1.1-1), GenomicRanges (>= 1.42.0),
        ggnewscale (>= 0.4.5), ggrepel (>= 0.9.1), gridExtra (>= 2.3),
        gtools (>= 3.9.2), IRanges (>= 2.24.1), kableExtra (>= 1.3.1),
        knitr (>= 1.29), kSamples (>= 1.2-9), markdown (>= 1.1), MAST
        (>= 1.16.0), org.Hs.eg.db (>= 3.10.0), org.Mm.eg.db (>=
        3.11.4), parallel, pheatmap (>= 1.0.12), reshape2 (>= 1.4.4),
        rmarkdown (>= 2.3), S4Vectors (>= 0.26.1), stringr (>= 1.4.0),
        textclean (>= 0.9.3), twosamples (>= 1.1.1), wiggleplotr (>=
        1.12.1)
Encoding: UTF-8
Authors@R: person("Sean", "Wen", role = c("aut", "cre"), email = "sean.wenwx@gmail.com")
License: GPL-3
RoxygenNote: 7.2.0
VignetteBuilder: knitr
ByteCompile: true
NeedsCompilation: no
Packaged: 2022-10-30 21:43:47 UTC; seanwen
Author: Sean Wen [aut, cre]
Maintainer: Sean Wen <sean.wenwx@gmail.com>
Depends: R (>= 3.5.0)
Repository: CRAN
Date/Publication: 2022-10-31 10:22:50 UTC
Built: R 4.2.3; ; 2024-04-24 01:57:10 UTC; windows
