e3f9991bd4f4ccb425eff6483484ede9 *DESCRIPTION
0f5649d6ecfc09873d4a206116e595a9 *LICENSE
241c1a45959f543d4340444bfb24fe8c *NAMESPACE
b8fb16f5129aaa36d90f41a851bab655 *NEWS.md
4c41cbe0e1b49a21b2a83d847a2019d7 *R/GC.R
b6e44c009d318cfe7e7ed6d907ccb9a2 *R/RcppExports.R
5c9bfea6e342ace0a5ecdd56621e942d *R/TmCalculator-package.R
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721936933d61a7574cf6bdd74ec8ee07 *R/ecoli_rep_hotspots.R
be89f5a3a054c84a790791117f8319a6 *R/generate_complement.R
53fea7340873f3be35079873c87621a7 *R/integrate_granges.R
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6496242b800d6382b37e35ae2bf6f95a *R/plot_genome_track.R
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d1c921ff0d9b9b50dabed9743ec5ad0a *R/utils.R
f58995de0d83dcd6fd25d381f7d73f2d *R/zzz.R
233d1f894ccfd71524b50643728be1c8 *README.md
99e186497b45c1f0792943514f070243 *build/vignette.rds
a7994afe0dedeed6ca2de96b3afa4ab6 *data/ecoli_rep_hotspots.rda
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8957e84a4ae4a445e6fcab421f3c5908 *data/thermodynamic_nn_params.RData
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4f9df58401b919c0ee2bc47150d78030 *inst/doc/genome_wide_tm_ecoli.Rmd
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42560f1afe1ac2a85981b74b58ad3ecd *inst/extdata/BSgenome.Hsapiens.UCSC.hg38.fasta
2a5855eff0f80bab01b7b6dad7177cc8 *inst/extdata/bench_hg38_cluster.csv
6860194e4fc59463051cb1f2b7c8ce2e *inst/extdata/bench_hg38_laptop.csv
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4f9df58401b919c0ee2bc47150d78030 *inst/vignette-source/genome_wide_tm_ecoli.Rmd
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21d274133dfabcc69882c069ba36f48a *man/TmCalculator-package.Rd
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3ec4c5002a07ab6681c03389caee2be2 *man/print.TmCalculator.Rd
fe5632a1a97ae8d4da8f20433f473542 *man/s2c.Rd
4afe70606a5a7e37b79347b8efafcecf *man/salt_correct.Rd
58c60d6ed95f26995dd62b9c473945c5 *man/thermodynamic_gc_params.Rd
0e18d79d9e01e636f741ca5e28136191 *man/thermodynamic_nn_params.Rd
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15e5fcc722e8721953c8712bcd95bcaa *man/tm_wallace.Rd
b8eb3368ec81e55f4437f51e8f8012a2 *man/to_genomic_ranges.Rd
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a4dfd08501a71be378cdac2852be3ab8 *src/RcppExports.cpp
10e69faf2f6d65ce18b3834e24dd0898 *src/gc_core.cpp
98bb11e8a5444a164ff7f7dd8c1986b0 *src/tm_nn_core.cpp
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d4f9cf35bda107539f23fe94839debc0 *tests/testthat/test_wallace_length.R
4f9df58401b919c0ee2bc47150d78030 *vignettes/genome_wide_tm_ecoli.Rmd
17795b624886a2ddc8a404629a324e4f *vignettes/hg38_performance_parallel.Rmd
684a840ade60aecba042ebf941b4c8ca *vignettes/window_size_sensitivity.Rmd
