CRAN Package Check Results for Package phangorn

Last updated on 2026-08-01 12:50:52 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.12.1 59.42 454.44 513.86 NOTE
r-devel-linux-x86_64-debian-gcc 2.12.1 40.20 303.85 344.05 NOTE
r-devel-linux-x86_64-fedora-clang 2.12.1 83.00 718.69 801.69 OK
r-devel-linux-x86_64-fedora-gcc 2.12.1 43.00 297.80 340.80 NOTE
r-devel-windows-x86_64 2.12.1 62.00 488.00 550.00 NOTE
r-patched-linux-x86_64 2.12.1 58.38 354.58 412.96 OK
r-release-linux-x86_64 2.12.1 58.55 356.58 415.13 OK
r-release-macos-arm64 2.12.1 12.00 86.00 98.00 OK
r-release-macos-x86_64 2.12.1 37.00 482.00 519.00 OK
r-release-windows-x86_64 2.12.1 68.00 396.00 464.00 OK
r-oldrel-macos-arm64 2.12.1 OK
r-oldrel-macos-x86_64 2.12.1 34.00 441.00 475.00 OK
r-oldrel-windows-x86_64 2.12.1 82.00 522.00 604.00 OK

Check Details

Version: 2.12.1
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: phangorn/R/bab.R (.Names: 3, .Dim: 2) phangorn/R/fitch64.R (.Dim: 1, .Names: 1) phangorn/R/phylo.R (.Dim: 2, .Names: 2) phangorn/R/splits.R (.Names: 1) '.Names' should be changed to 'names'. '.Dim' should be changed to 'dim'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.12.1
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0JuUng’ ‘~/tmp/scratch/Rtmp0TR8ZQ’ ‘~/tmp/scratch/Rtmp0k9XlU’ ‘~/tmp/scratch/Rtmp0xF2az’ ‘~/tmp/scratch/Rtmp0yO9vZ’ ‘~/tmp/scratch/Rtmp1KJzKh’ ‘~/tmp/scratch/Rtmp1tJCQU’ ‘~/tmp/scratch/Rtmp2Q6LGS’ ‘~/tmp/scratch/Rtmp3F1bPJ’ ‘~/tmp/scratch/Rtmp3Zk0tw’ ‘~/tmp/scratch/Rtmp3iWj7P’ ‘~/tmp/scratch/Rtmp3uoAaM’ ‘~/tmp/scratch/Rtmp42OIrb’ ‘~/tmp/scratch/Rtmp46pqhy’ ‘~/tmp/scratch/Rtmp4outgH’ ‘~/tmp/scratch/Rtmp599z0X’ ‘~/tmp/scratch/Rtmp5RR9DY’ ‘~/tmp/scratch/Rtmp5c8uIx’ ‘~/tmp/scratch/Rtmp5yHWsD’ ‘~/tmp/scratch/Rtmp61FwDw’ ‘~/tmp/scratch/Rtmp6C2i10’ ‘~/tmp/scratch/Rtmp6MLAg0’ ‘~/tmp/scratch/Rtmp6NI2pO’ ‘~/tmp/scratch/Rtmp6ZIePM’ ‘~/tmp/scratch/Rtmp7Y3Dgb’ ‘~/tmp/scratch/Rtmp7eu3Z6’ ‘~/tmp/scratch/Rtmp7gXgh0’ ‘~/tmp/scratch/Rtmp8n5GTe’ ‘~/tmp/scratch/Rtmp8wiU8T’ ‘~/tmp/scratch/Rtmp9Jq9dq’ ‘~/tmp/scratch/Rtmp9N4wLx’ ‘~/tmp/scratch/Rtmp9P0TCr’ ‘~/tmp/scratch/Rtmp9hzGtI’ ‘~/tmp/scratch/Rtmp9sHVli’ ‘~/tmp/scratch/RtmpA5tt1N’ ‘~/tmp/scratch/RtmpAMVQOy’ ‘~/tmp/scratch/RtmpAy2S5k’ ‘~/tmp/scratch/RtmpBsvPNd’ ‘~/tmp/scratch/RtmpBuI6bW’ ‘~/tmp/scratch/RtmpC2QcIh’ ‘~/tmp/scratch/RtmpCIA3Ui’ ‘~/tmp/scratch/RtmpCY5tie’ ‘~/tmp/scratch/RtmpD5PbU5’ ‘~/tmp/scratch/RtmpDS0Unz’ ‘~/tmp/scratch/RtmpDY2bIQ’ ‘~/tmp/scratch/RtmpEbgPAC’ ‘~/tmp/scratch/RtmpEcJiVM’ ‘~/tmp/scratch/RtmpEyxklb’ ‘~/tmp/scratch/RtmpFDxyMj’ ‘~/tmp/scratch/RtmpFRvhJU’ ‘~/tmp/scratch/RtmpFcICA3’ ‘~/tmp/scratch/RtmpGIX6Vk’ ‘~/tmp/scratch/RtmpGKmbY2’ ‘~/tmp/scratch/RtmpH2pwXJ’ ‘~/tmp/scratch/RtmpH5JyxT’ ‘~/tmp/scratch/RtmpI2IvFX’ ‘~/tmp/scratch/RtmpIUY0QO’ ‘~/tmp/scratch/RtmpIkecHB’ ‘~/tmp/scratch/RtmpJ3xvui’ ‘~/tmp/scratch/RtmpJF0sKQ’ ‘~/tmp/scratch/RtmpJGZy7V’ ‘~/tmp/scratch/RtmpKHHyfk’ ‘~/tmp/scratch/RtmpKKHrU6’ ‘~/tmp/scratch/RtmpKZfSfW’ ‘~/tmp/scratch/RtmpKq1B7p’ ‘~/tmp/scratch/RtmpLhtger’ ‘~/tmp/scratch/RtmpM0LdHM’ ‘~/tmp/scratch/RtmpMHQzai’ ‘~/tmp/scratch/RtmpMJggmk’ ‘~/tmp/scratch/RtmpNbE8eo’ ‘~/tmp/scratch/RtmpO5BfNQ’ ‘~/tmp/scratch/RtmpO6sZj1’ ‘~/tmp/scratch/RtmpOqqKns’ ‘~/tmp/scratch/RtmpP9J31I’ ‘~/tmp/scratch/RtmpQ1jZ4l’ ‘~/tmp/scratch/RtmpQ870L2’ ‘~/tmp/scratch/RtmpQCS6kO’ ‘~/tmp/scratch/RtmpRS4q4Z’ ‘~/tmp/scratch/RtmpRWWLgo’ ‘~/tmp/scratch/RtmpRmUpaB’ ‘~/tmp/scratch/RtmpSxxa41’ ‘~/tmp/scratch/RtmpSzkEa9’ ‘~/tmp/scratch/RtmpT0rOcy’ ‘~/tmp/scratch/RtmpTRUuVk’ ‘~/tmp/scratch/RtmpTqI8n0’ ‘~/tmp/scratch/RtmpUUNqbg’ ‘~/tmp/scratch/RtmpUm8eqV’ ‘~/tmp/scratch/RtmpVkC63J’ ‘~/tmp/scratch/RtmpWR33je’ ‘~/tmp/scratch/RtmpWRBABl’ ‘~/tmp/scratch/RtmpWSO0OW’ ‘~/tmp/scratch/RtmpWptbMq’ ‘~/tmp/scratch/RtmpWs0L6e’ ‘~/tmp/scratch/RtmpX4bL2t’ ‘~/tmp/scratch/RtmpXQlyVI’ ‘~/tmp/scratch/RtmpXSLxZH’ ‘~/tmp/scratch/RtmpY1Wu3O’ ‘~/tmp/scratch/RtmpY4lmfg’ ‘~/tmp/scratch/RtmpY7JLSh’ ‘~/tmp/scratch/RtmpYJhXj0’ ‘~/tmp/scratch/RtmpYcg0WN’ ‘~/tmp/scratch/RtmpZ8oLny’ ‘~/tmp/scratch/RtmpZDSuKG’ ‘~/tmp/scratch/RtmpZXnQoC’ ‘~/tmp/scratch/RtmpZdr27q’ ‘~/tmp/scratch/RtmpZgP7Bl’ ‘~/tmp/scratch/RtmpaKQcSb’ ‘~/tmp/scratch/RtmpaXyaLY’ ‘~/tmp/scratch/Rtmpaa9Ws6’ ‘~/tmp/scratch/RtmpasyKqF’ ‘~/tmp/scratch/RtmpbT8q03’ ‘~/tmp/scratch/RtmpcJDx8C’ ‘~/tmp/scratch/RtmpdTAf8T’ ‘~/tmp/scratch/RtmpeM814q’ ‘~/tmp/scratch/RtmpeY2hTS’ ‘~/tmp/scratch/Rtmper8wNl’ ‘~/tmp/scratch/Rtmpf9849q’ ‘~/tmp/scratch/RtmpfJLKxS’ ‘~/tmp/scratch/RtmpfPh8GY’ ‘~/tmp/scratch/RtmpgCQORv’ ‘~/tmp/scratch/RtmpgUMBhu’ ‘~/tmp/scratch/Rtmpgm7tOg’ ‘~/tmp/scratch/Rtmph09IHD’ ‘~/tmp/scratch/RtmphUOJBR’ ‘~/tmp/scratch/Rtmpi0v8ne’ ‘~/tmp/scratch/RtmpiKCP8u’ ‘~/tmp/scratch/RtmpiNOFUf’ ‘~/tmp/scratch/RtmpijeLSY’ ‘~/tmp/scratch/Rtmpj8cwiz’ ‘~/tmp/scratch/RtmpjE2GBP’ ‘~/tmp/scratch/RtmpjUFMh8’ ‘~/tmp/scratch/Rtmpkw9KNZ’ ‘~/tmp/scratch/RtmpmHFs0X’ ‘~/tmp/scratch/RtmpmXHFtI’ ‘~/tmp/scratch/RtmpmlJeZe’ ‘~/tmp/scratch/RtmpmwIVzM’ ‘~/tmp/scratch/Rtmpn5N1F5’ ‘~/tmp/scratch/Rtmpn6RJey’ ‘~/tmp/scratch/Rtmpn75TH1’ ‘~/tmp/scratch/RtmpnClFs4’ ‘~/tmp/scratch/RtmpnJB0Fb’ ‘~/tmp/scratch/RtmpnPaTVz’ ‘~/tmp/scratch/RtmpntSXTi’ ‘~/tmp/scratch/RtmpoaLugW’ ‘~/tmp/scratch/RtmpoiOfZ0’ ‘~/tmp/scratch/RtmporBGc7’ ‘~/tmp/scratch/RtmppNd7DF’ ‘~/tmp/scratch/RtmppeWOic’ ‘~/tmp/scratch/Rtmpq4FMiq’ ‘~/tmp/scratch/RtmpqN3iwp’ ‘~/tmp/scratch/RtmpqtuwJD’ ‘~/tmp/scratch/Rtmpr9IIOy’ ‘~/tmp/scratch/RtmprFClyd’ ‘~/tmp/scratch/RtmprP98ky’ ‘~/tmp/scratch/RtmprkR4Qu’ ‘~/tmp/scratch/Rtmps7oItE’ ‘~/tmp/scratch/RtmpsI2SEv’ ‘~/tmp/scratch/RtmpsUcLwX’ ‘~/tmp/scratch/RtmpsydjT5’ ‘~/tmp/scratch/RtmptUBM9v’ ‘~/tmp/scratch/RtmptmIYEI’ ‘~/tmp/scratch/Rtmpu40fTO’ ‘~/tmp/scratch/RtmpuFqo3R’ ‘~/tmp/scratch/RtmpueVQJp’ ‘~/tmp/scratch/RtmpuovR9r’ ‘~/tmp/scratch/Rtmpv8grzB’ ‘~/tmp/scratch/RtmpvoB6OG’ ‘~/tmp/scratch/RtmpvvCSyK’ ‘~/tmp/scratch/RtmpwAbcsX’ ‘~/tmp/scratch/Rtmpwf5PVz’ ‘~/tmp/scratch/Rtmpx14WCj’ ‘~/tmp/scratch/Rtmpx9UOCc’ ‘~/tmp/scratch/Rtmpy1w1jF’ ‘~/tmp/scratch/RtmpycwCw3’ ‘~/tmp/scratch/RtmpypsG4s’ ‘~/tmp/scratch/RtmpztZMRz’ ‘~/tmp/scratch/RtmpzvT6SD’ ‘~/tmp/scratch/xvfb-run.1ZD8K2’ ‘~/tmp/scratch/xvfb-run.3GKYYj’ ‘~/tmp/scratch/xvfb-run.3pgemt’ ‘~/tmp/scratch/xvfb-run.4iN4rs’ ‘~/tmp/scratch/xvfb-run.4n5Ojj’ ‘~/tmp/scratch/xvfb-run.4zNdMg’ ‘~/tmp/scratch/xvfb-run.6Z2UXS’ ‘~/tmp/scratch/xvfb-run.9UCemB’ ‘~/tmp/scratch/xvfb-run.CNUQ1n’ ‘~/tmp/scratch/xvfb-run.Ch3CSd’ ‘~/tmp/scratch/xvfb-run.DMFbCI’ ‘~/tmp/scratch/xvfb-run.EmxmAb’ ‘~/tmp/scratch/xvfb-run.GWB00R’ ‘~/tmp/scratch/xvfb-run.HpLgyW’ ‘~/tmp/scratch/xvfb-run.IbKq4C’ ‘~/tmp/scratch/xvfb-run.JqmH8V’ ‘~/tmp/scratch/xvfb-run.Jrh4SQ’ ‘~/tmp/scratch/xvfb-run.K5Fe1z’ ‘~/tmp/scratch/xvfb-run.LHwEXo’ ‘~/tmp/scratch/xvfb-run.LsEQhq’ ‘~/tmp/scratch/xvfb-run.MN1Sml’ ‘~/tmp/scratch/xvfb-run.MfgF17’ ‘~/tmp/scratch/xvfb-run.NygzVh’ ‘~/tmp/scratch/xvfb-run.Op5eg2’ ‘~/tmp/scratch/xvfb-run.P1NUYT’ ‘~/tmp/scratch/xvfb-run.P81pOI’ ‘~/tmp/scratch/xvfb-run.PiibWE’ ‘~/tmp/scratch/xvfb-run.PsSO3b’ ‘~/tmp/scratch/xvfb-run.QGckWw’ ‘~/tmp/scratch/xvfb-run.QPFS32’ ‘~/tmp/scratch/xvfb-run.RTj4Q6’ ‘~/tmp/scratch/xvfb-run.RovpBa’ ‘~/tmp/scratch/xvfb-run.S02Y5l’ ‘~/tmp/scratch/xvfb-run.SKoz4U’ ‘~/tmp/scratch/xvfb-run.TUO34Y’ ‘~/tmp/scratch/xvfb-run.TgTZdx’ ‘~/tmp/scratch/xvfb-run.U5aApb’ ‘~/tmp/scratch/xvfb-run.VZYrbq’ ‘~/tmp/scratch/xvfb-run.VxSmu3’ ‘~/tmp/scratch/xvfb-run.W0W4fy’ ‘~/tmp/scratch/xvfb-run.WSaS9b’ ‘~/tmp/scratch/xvfb-run.WgUWeN’ ‘~/tmp/scratch/xvfb-run.XpEXhT’ ‘~/tmp/scratch/xvfb-run.XtyYfd’ ‘~/tmp/scratch/xvfb-run.Y33jVj’ ‘~/tmp/scratch/xvfb-run.Y9dCtB’ ‘~/tmp/scratch/xvfb-run.ZeYhWg’ ‘~/tmp/scratch/xvfb-run.bbxgkw’ ‘~/tmp/scratch/xvfb-run.c3qSju’ ‘~/tmp/scratch/xvfb-run.dNTDZF’ ‘~/tmp/scratch/xvfb-run.diqyCn’ ‘~/tmp/scratch/xvfb-run.dvPPNB’ ‘~/tmp/scratch/xvfb-run.e4M2qY’ ‘~/tmp/scratch/xvfb-run.fcHsFZ’ ‘~/tmp/scratch/xvfb-run.gyXRvz’ ‘~/tmp/scratch/xvfb-run.hvRXoX’ ‘~/tmp/scratch/xvfb-run.iEzuvp’ ‘~/tmp/scratch/xvfb-run.iauinB’ ‘~/tmp/scratch/xvfb-run.ins2EW’ ‘~/tmp/scratch/xvfb-run.j9QzA1’ ‘~/tmp/scratch/xvfb-run.kNQeW8’ ‘~/tmp/scratch/xvfb-run.ka40Lq’ ‘~/tmp/scratch/xvfb-run.oywaYR’ ‘~/tmp/scratch/xvfb-run.qIpKzb’ ‘~/tmp/scratch/xvfb-run.qmV1xJ’ ‘~/tmp/scratch/xvfb-run.r4D68I’ ‘~/tmp/scratch/xvfb-run.rDtEQp’ ‘~/tmp/scratch/xvfb-run.rOkmKl’ ‘~/tmp/scratch/xvfb-run.s4Xa8q’ ‘~/tmp/scratch/xvfb-run.s6DyEj’ ‘~/tmp/scratch/xvfb-run.sRMVe1’ ‘~/tmp/scratch/xvfb-run.sfomd3’ ‘~/tmp/scratch/xvfb-run.ub5j0u’ ‘~/tmp/scratch/xvfb-run.wVcHH4’ ‘~/tmp/scratch/xvfb-run.xLuYZv’ ‘~/tmp/scratch/xvfb-run.y0Wd7S’ ‘~/tmp/scratch/xvfb-run.y5o7yK’ ‘~/tmp/scratch/xvfb-run.yBUuZQ’ ‘~/tmp/scratch/xvfb-run.ywXy70’ ‘~/tmp/scratch/xvfb-run.z3jBDL’ ‘/dev/shm/sm_segment.gimli1.1001.44fa0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.52410000.0’ ‘/dev/shm/sm_segment.gimli1.1001.53e00000.0’ ‘/dev/shm/sm_segment.gimli1.1001.6ea90000.0’ ‘/dev/shm/sm_segment.gimli1.1001.710c0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.76480000.0’ ‘/dev/shm/sm_segment.gimli1.1001.85bf0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.8f470000.0’ ‘/dev/shm/sm_segment.gimli1.1001.bd920000.0’ ‘/dev/shm/sm_segment.gimli1.1001.d7b80000.0’ ‘/dev/shm/sm_segment.gimli1.1001.db910000.0’ ‘/dev/shm/sm_segment.gimli1.1001.f5bd0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.ff1b0000.0’ ‘~/.cache/pocl/uncached/tempfile_5QexWB’ ‘~/.cache/pocl/uncached/tempfile_6MDghM’ ‘~/.cache/pocl/uncached/tempfile_95cu5E’ ‘~/.cache/pocl/uncached/tempfile_B27smR’ ‘~/.cache/pocl/uncached/tempfile_CDdhDL’ ‘~/.cache/pocl/uncached/tempfile_Em6V4j’ ‘~/.cache/pocl/uncached/tempfile_JeqcvB’ ‘~/.cache/pocl/uncached/tempfile_Mw1z3p’ ‘~/.cache/pocl/uncached/tempfile_YiGzI8’ ‘~/.cache/pocl/uncached/tempfile_d01HZe’ ‘~/.cache/pocl/uncached/tempfile_dzTWOX’ ‘~/.cache/pocl/uncached/tempfile_foPjYu’ ‘~/.cache/pocl/uncached/tempfile_rOgAA5’ ‘~/.cache/pocl/uncached/tempfile_xdmgau’ Flavor: r-devel-linux-x86_64-debian-gcc