CRAN Package Check Results for Package phangorn

Last updated on 2026-08-02 00:50:33 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.12.1 59.42 454.44 513.86 NOTE
r-devel-linux-x86_64-debian-gcc 2.12.1 41.21 321.29 362.50 NOTE
r-devel-linux-x86_64-fedora-clang 2.12.1 83.00 718.69 801.69 OK
r-devel-linux-x86_64-fedora-gcc 2.12.1 43.00 297.80 340.80 NOTE
r-devel-windows-x86_64 2.12.1 62.00 488.00 550.00 NOTE
r-patched-linux-x86_64 2.12.1 58.38 354.58 412.96 OK
r-release-linux-x86_64 2.12.1 58.55 356.58 415.13 OK
r-release-macos-arm64 2.12.1 12.00 86.00 98.00 OK
r-release-macos-x86_64 2.12.1 37.00 482.00 519.00 OK
r-release-windows-x86_64 2.12.1 68.00 396.00 464.00 OK
r-oldrel-macos-arm64 2.12.1 OK
r-oldrel-macos-x86_64 2.12.1 34.00 441.00 475.00 OK
r-oldrel-windows-x86_64 2.12.1 82.00 522.00 604.00 OK

Check Details

Version: 2.12.1
Check: R code for possible problems
Result: NOTE Found calls to structure() using deprecated special names: phangorn/R/bab.R (.Names: 3, .Dim: 2) phangorn/R/fitch64.R (.Dim: 1, .Names: 1) phangorn/R/phylo.R (.Dim: 2, .Names: 2) phangorn/R/splits.R (.Names: 1) '.Names' should be changed to 'names'. '.Dim' should be changed to 'dim'. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Version: 2.12.1
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0LpWrF’ ‘~/tmp/scratch/Rtmp10KSH9’ ‘~/tmp/scratch/Rtmp1gYYBQ’ ‘~/tmp/scratch/Rtmp1rGCsL’ ‘~/tmp/scratch/Rtmp1vByMX’ ‘~/tmp/scratch/Rtmp2JIJU4’ ‘~/tmp/scratch/Rtmp30uyLW’ ‘~/tmp/scratch/Rtmp52AdIZ’ ‘~/tmp/scratch/Rtmp53vQ9t’ ‘~/tmp/scratch/Rtmp5RgVFh’ ‘~/tmp/scratch/Rtmp6ISGBH’ ‘~/tmp/scratch/Rtmp6RA9v6’ ‘~/tmp/scratch/Rtmp7kIP3o’ ‘~/tmp/scratch/Rtmp7oET4Y’ ‘~/tmp/scratch/Rtmp7rlRjG’ ‘~/tmp/scratch/Rtmp7tgbsy’ ‘~/tmp/scratch/Rtmp8dx2FO’ ‘~/tmp/scratch/Rtmp902hUo’ ‘~/tmp/scratch/Rtmp9F9hV7’ ‘~/tmp/scratch/Rtmp9Gi43l’ ‘~/tmp/scratch/RtmpAEYTXN’ ‘~/tmp/scratch/RtmpAUThFD’ ‘~/tmp/scratch/RtmpAZmcn3’ ‘~/tmp/scratch/RtmpAi8RfK’ ‘~/tmp/scratch/RtmpB0Hqvq’ ‘~/tmp/scratch/RtmpB4KL9R’ ‘~/tmp/scratch/RtmpBz1wxf’ ‘~/tmp/scratch/RtmpCQtskW’ ‘~/tmp/scratch/RtmpCeIIu0’ ‘~/tmp/scratch/RtmpEAvSSu’ ‘~/tmp/scratch/RtmpEKjITx’ ‘~/tmp/scratch/RtmpFD4jCa’ ‘~/tmp/scratch/RtmpFiBu7G’ ‘~/tmp/scratch/RtmpG6yX2D’ ‘~/tmp/scratch/RtmpGGWNyL’ ‘~/tmp/scratch/RtmpGRoR5s’ ‘~/tmp/scratch/RtmpGYhhpm’ ‘~/tmp/scratch/RtmpGsHySU’ ‘~/tmp/scratch/RtmpHeQSLn’ ‘~/tmp/scratch/RtmpI59feF’ ‘~/tmp/scratch/RtmpIMO8Bq’ ‘~/tmp/scratch/RtmpIR4cMF’ ‘~/tmp/scratch/RtmpISubOf’ ‘~/tmp/scratch/RtmpJO0YeL’ ‘~/tmp/scratch/RtmpJTH7ZA’ ‘~/tmp/scratch/RtmpJTX8qn’ ‘~/tmp/scratch/RtmpKLn5f1’ ‘~/tmp/scratch/RtmpKxO5Dr’ ‘~/tmp/scratch/RtmpLAZslh’ ‘~/tmp/scratch/RtmpLDJYLX’ ‘~/tmp/scratch/RtmpLuNtR2’ ‘~/tmp/scratch/RtmpM3b2R7’ ‘~/tmp/scratch/RtmpMECbr6’ ‘~/tmp/scratch/RtmpMG8HnB’ ‘~/tmp/scratch/RtmpMafoDf’ ‘~/tmp/scratch/RtmpMc9IC1’ ‘~/tmp/scratch/RtmpMgrXcZ’ ‘~/tmp/scratch/RtmpMxGFws’ ‘~/tmp/scratch/RtmpN3SbYs’ ‘~/tmp/scratch/RtmpNEwyF0’ ‘~/tmp/scratch/RtmpNgWFqq’ ‘~/tmp/scratch/RtmpNx82PN’ ‘~/tmp/scratch/RtmpOEQwkZ’ ‘~/tmp/scratch/RtmpOHr5hg’ ‘~/tmp/scratch/RtmpOrXQhD’ ‘~/tmp/scratch/RtmpPUIRKQ’ ‘~/tmp/scratch/RtmpPdrgd8’ ‘~/tmp/scratch/RtmpPkToXw’ ‘~/tmp/scratch/RtmpRnaju5’ ‘~/tmp/scratch/RtmpSW2AE9’ ‘~/tmp/scratch/RtmpSdvZU9’ ‘~/tmp/scratch/RtmpT4Ktki’ ‘~/tmp/scratch/RtmpTOiT4X’ ‘~/tmp/scratch/RtmpTPhs4p’ ‘~/tmp/scratch/RtmpThOHfI’ ‘~/tmp/scratch/RtmpTkmHCO’ ‘~/tmp/scratch/RtmpUTsz4A’ ‘~/tmp/scratch/RtmpUl0yP0’ ‘~/tmp/scratch/RtmpUp5o5w’ ‘~/tmp/scratch/RtmpV18Ith’ ‘~/tmp/scratch/RtmpV9QThI’ ‘~/tmp/scratch/RtmpVgSBzm’ ‘~/tmp/scratch/RtmpWivftU’ ‘~/tmp/scratch/RtmpX6sfgS’ ‘~/tmp/scratch/RtmpXHfBvI’ ‘~/tmp/scratch/RtmpXTrKaL’ ‘~/tmp/scratch/RtmpY8peiY’ ‘~/tmp/scratch/RtmpYGMXLB’ ‘~/tmp/scratch/RtmpYaOCRA’ ‘~/tmp/scratch/RtmpYn8sgC’ ‘~/tmp/scratch/RtmpZ606KE’ ‘~/tmp/scratch/RtmpaIpgaP’ ‘~/tmp/scratch/RtmpaT4WnZ’ ‘~/tmp/scratch/Rtmpalb2aI’ ‘~/tmp/scratch/RtmpbJhQFk’ ‘~/tmp/scratch/RtmpbKKIra’ ‘~/tmp/scratch/RtmpbQJEPJ’ ‘~/tmp/scratch/RtmpcbRVov’ ‘~/tmp/scratch/RtmpcpcjXr’ ‘~/tmp/scratch/Rtmpd00P5o’ ‘~/tmp/scratch/RtmpddqtDG’ ‘~/tmp/scratch/RtmpdeaINM’ ‘~/tmp/scratch/Rtmpdgn6nP’ ‘~/tmp/scratch/RtmpeIW7y2’ ‘~/tmp/scratch/RtmpeUhXbT’ ‘~/tmp/scratch/RtmpesBVTZ’ ‘~/tmp/scratch/RtmpfE63B6’ ‘~/tmp/scratch/RtmpgJDd8C’ ‘~/tmp/scratch/RtmpgNjuZe’ ‘~/tmp/scratch/RtmpgsNOBk’ ‘~/tmp/scratch/RtmpgveCrL’ ‘~/tmp/scratch/RtmpiBvxdj’ ‘~/tmp/scratch/RtmpiwyvIK’ ‘~/tmp/scratch/RtmpjGIZJ0’ ‘~/tmp/scratch/RtmpjPtJH0’ ‘~/tmp/scratch/RtmpjeBCg0’ ‘~/tmp/scratch/RtmplBQ731’ ‘~/tmp/scratch/RtmplFAqj5’ ‘~/tmp/scratch/RtmplhNOWk’ ‘~/tmp/scratch/RtmplurvK3’ ‘~/tmp/scratch/Rtmplxpf4b’ ‘~/tmp/scratch/RtmpmEJ50G’ ‘~/tmp/scratch/RtmpmEzSYx’ ‘~/tmp/scratch/RtmpmRd81f’ ‘~/tmp/scratch/RtmpmpkroH’ ‘~/tmp/scratch/Rtmpmvei10’ ‘~/tmp/scratch/Rtmpn0w7x9’ ‘~/tmp/scratch/RtmpnDTKrV’ ‘~/tmp/scratch/RtmpnJylQS’ ‘~/tmp/scratch/RtmpnhecpN’ ‘~/tmp/scratch/RtmpnpkIOS’ ‘~/tmp/scratch/Rtmpo9Ds7O’ ‘~/tmp/scratch/RtmpoNuM8n’ ‘~/tmp/scratch/RtmpoPp52N’ ‘~/tmp/scratch/RtmpozofCA’ ‘~/tmp/scratch/RtmppKZlcp’ ‘~/tmp/scratch/RtmpprdTyF’ ‘~/tmp/scratch/Rtmpq9yDjP’ ‘~/tmp/scratch/RtmpqsBV7K’ ‘~/tmp/scratch/RtmpqxFHlD’ ‘~/tmp/scratch/Rtmpr4zq6F’ ‘~/tmp/scratch/RtmprBhw40’ ‘~/tmp/scratch/RtmpreuGVi’ ‘~/tmp/scratch/Rtmps8Vazc’ ‘~/tmp/scratch/Rtmpss7sYz’ ‘~/tmp/scratch/RtmpszkrA2’ ‘~/tmp/scratch/RtmpuFQXX4’ ‘~/tmp/scratch/RtmpuL3KEz’ ‘~/tmp/scratch/Rtmpuy7CDk’ ‘~/tmp/scratch/RtmpvJV5pz’ ‘~/tmp/scratch/RtmpvcBr9R’ ‘~/tmp/scratch/RtmpvcaIS0’ ‘~/tmp/scratch/Rtmpw5wAEH’ ‘~/tmp/scratch/RtmpwJhMF2’ ‘~/tmp/scratch/RtmpwfgsFw’ ‘~/tmp/scratch/RtmpwqiF3I’ ‘~/tmp/scratch/Rtmpwx67W3’ ‘~/tmp/scratch/Rtmpx8kPtn’ ‘~/tmp/scratch/RtmpxgAj7o’ ‘~/tmp/scratch/RtmpxwjpBo’ ‘~/tmp/scratch/RtmpyP1d60’ ‘~/tmp/scratch/RtmpyciFEt’ ‘~/tmp/scratch/RtmpyfV0rZ’ ‘~/tmp/scratch/RtmpymGDzw’ ‘~/tmp/scratch/RtmpzacY84’ ‘~/tmp/scratch/Rtmpzklpr0’ ‘~/tmp/scratch/RtmpzxbGx0’ ‘~/tmp/scratch/quarto-session9cd06d398eeba459’ ‘~/tmp/scratch/xvfb-run.0JqoFe’ ‘~/tmp/scratch/xvfb-run.0M6NTt’ ‘~/tmp/scratch/xvfb-run.2PRdXe’ ‘~/tmp/scratch/xvfb-run.3B2EZo’ ‘~/tmp/scratch/xvfb-run.3IRlmB’ ‘~/tmp/scratch/xvfb-run.4OfVUa’ ‘~/tmp/scratch/xvfb-run.54ftyJ’ ‘~/tmp/scratch/xvfb-run.5IqzwE’ ‘~/tmp/scratch/xvfb-run.5MxMan’ ‘~/tmp/scratch/xvfb-run.61cT44’ ‘~/tmp/scratch/xvfb-run.66fetY’ ‘~/tmp/scratch/xvfb-run.6OizPU’ ‘~/tmp/scratch/xvfb-run.76Ra7L’ ‘~/tmp/scratch/xvfb-run.7AEeJr’ ‘~/tmp/scratch/xvfb-run.7hga3r’ ‘~/tmp/scratch/xvfb-run.8RINNq’ ‘~/tmp/scratch/xvfb-run.8o8jjj’ ‘~/tmp/scratch/xvfb-run.9VQuW8’ ‘~/tmp/scratch/xvfb-run.9ibmzk’ ‘~/tmp/scratch/xvfb-run.AQ4l4d’ ‘~/tmp/scratch/xvfb-run.AoHbKT’ ‘~/tmp/scratch/xvfb-run.BuXXmw’ ‘~/tmp/scratch/xvfb-run.Cjyz5w’ ‘~/tmp/scratch/xvfb-run.D7ZSVG’ ‘~/tmp/scratch/xvfb-run.FSkt6Y’ ‘~/tmp/scratch/xvfb-run.Ic8nq3’ ‘~/tmp/scratch/xvfb-run.JeqHez’ ‘~/tmp/scratch/xvfb-run.KUqAZW’ ‘~/tmp/scratch/xvfb-run.KYwNpA’ ‘~/tmp/scratch/xvfb-run.L2DJzh’ ‘~/tmp/scratch/xvfb-run.Lv03uC’ ‘~/tmp/scratch/xvfb-run.Lyfj04’ ‘~/tmp/scratch/xvfb-run.MaeXyA’ ‘~/tmp/scratch/xvfb-run.OTSewJ’ ‘~/tmp/scratch/xvfb-run.OnnCeV’ ‘~/tmp/scratch/xvfb-run.Pi8CnB’ ‘~/tmp/scratch/xvfb-run.QRx3Sh’ ‘~/tmp/scratch/xvfb-run.RTUWZn’ ‘~/tmp/scratch/xvfb-run.RlzDbC’ ‘~/tmp/scratch/xvfb-run.SGh2rF’ ‘~/tmp/scratch/xvfb-run.SKtyMQ’ ‘~/tmp/scratch/xvfb-run.Ulan66’ ‘~/tmp/scratch/xvfb-run.VvMBW5’ ‘~/tmp/scratch/xvfb-run.VzBATW’ ‘~/tmp/scratch/xvfb-run.XOU2id’ ‘~/tmp/scratch/xvfb-run.Z8urDM’ ‘~/tmp/scratch/xvfb-run.aDWBB3’ ‘~/tmp/scratch/xvfb-run.adch5B’ ‘~/tmp/scratch/xvfb-run.byZfLW’ ‘~/tmp/scratch/xvfb-run.cbPFek’ ‘~/tmp/scratch/xvfb-run.cwGs6c’ ‘~/tmp/scratch/xvfb-run.fQyqil’ ‘~/tmp/scratch/xvfb-run.fUbL5r’ ‘~/tmp/scratch/xvfb-run.gOXd4r’ ‘~/tmp/scratch/xvfb-run.gyBFMK’ ‘~/tmp/scratch/xvfb-run.iNj8a9’ ‘~/tmp/scratch/xvfb-run.irePlq’ ‘~/tmp/scratch/xvfb-run.m90ox4’ ‘~/tmp/scratch/xvfb-run.mEYHTa’ ‘~/tmp/scratch/xvfb-run.nCXrTv’ ‘~/tmp/scratch/xvfb-run.o6zgFM’ ‘~/tmp/scratch/xvfb-run.pQbBN2’ ‘~/tmp/scratch/xvfb-run.pRCnAr’ ‘~/tmp/scratch/xvfb-run.pocPNb’ ‘~/tmp/scratch/xvfb-run.qtSNYj’ ‘~/tmp/scratch/xvfb-run.r9fXNz’ ‘~/tmp/scratch/xvfb-run.rE9YWo’ ‘~/tmp/scratch/xvfb-run.rJHgrN’ ‘~/tmp/scratch/xvfb-run.rN2eTz’ ‘~/tmp/scratch/xvfb-run.rhvFEi’ ‘~/tmp/scratch/xvfb-run.t1UIRo’ ‘~/tmp/scratch/xvfb-run.tCMZ4o’ ‘~/tmp/scratch/xvfb-run.uj0b3P’ ‘~/tmp/scratch/xvfb-run.ujnfn5’ ‘~/tmp/scratch/xvfb-run.uql0WM’ ‘~/tmp/scratch/xvfb-run.vmN7zB’ ‘~/tmp/scratch/xvfb-run.wbEByO’ ‘~/tmp/scratch/xvfb-run.xpaXFn’ ‘~/tmp/scratch/xvfb-run.yTQVnj’ ‘/dev/shm/sm_segment.gimli1.1001.15840000.0’ ‘/dev/shm/sm_segment.gimli1.1001.25130000.0’ ‘/dev/shm/sm_segment.gimli1.1001.36b60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.3a030000.0’ ‘/dev/shm/sm_segment.gimli1.1001.3d8e0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.4b0e0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.4e660000.0’ ‘/dev/shm/sm_segment.gimli1.1001.528a0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.731a0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.79280000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7a010000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7b6c0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7bd60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7bf0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7c160000.0’ ‘/dev/shm/sm_segment.gimli1.1001.854c0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.86910000.0’ ‘/dev/shm/sm_segment.gimli1.1001.a0ab0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.b4c60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.c3690000.0’ ‘/dev/shm/sm_segment.gimli1.1001.d0c20000.0’ ‘/dev/shm/sm_segment.gimli1.1001.ed000000.0’ ‘/dev/shm/sm_segment.gimli1.1001.fc460000.0’ ‘~/.cache/pocl/uncached/tempfile_3D9q6C’ ‘~/.cache/pocl/uncached/tempfile_3E9Ghg’ ‘~/.cache/pocl/uncached/tempfile_61CdJp’ ‘~/.cache/pocl/uncached/tempfile_AmuBuR’ ‘~/.cache/pocl/uncached/tempfile_FXKm0L’ ‘~/.cache/pocl/uncached/tempfile_I1nBQI’ ‘~/.cache/pocl/uncached/tempfile_OmavZQ’ ‘~/.cache/pocl/uncached/tempfile_Qn0D1N’ ‘~/.cache/pocl/uncached/tempfile_SZtkDd’ ‘~/.cache/pocl/uncached/tempfile_UIKDx0’ ‘~/.cache/pocl/uncached/tempfile_WT23zf’ ‘~/.cache/pocl/uncached/tempfile_Zg9WMU’ ‘~/.cache/pocl/uncached/tempfile_bYQJyD’ ‘~/.cache/pocl/uncached/tempfile_ewxati’ ‘~/.cache/pocl/uncached/tempfile_jDToQ1’ ‘~/.cache/pocl/uncached/tempfile_jEtz3N’ ‘~/.cache/pocl/uncached/tempfile_l5WYB5’ ‘~/.cache/pocl/uncached/tempfile_mIsuHk’ ‘~/.cache/pocl/uncached/tempfile_nblEF6’ ‘~/.cache/pocl/uncached/tempfile_pJJyll’ ‘~/.cache/pocl/uncached/tempfile_pS9ULH’ ‘~/.cache/pocl/uncached/tempfile_xrgni0’ ‘~/.cache/pocl/uncached/tempfile_zpBAEy’ Flavor: r-devel-linux-x86_64-debian-gcc