Last updated on 2026-08-03 01:49:43 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.15.4 | 129.92 | 73.48 | 203.40 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 2.72 | 226.19 | 228.91 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 358.17 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 186.14 | OK | |||
| r-devel-windows-x86_64 | 1.15.4 | 152.00 | 194.00 | 346.00 | NOTE | |
| r-patched-linux-x86_64 | 1.15.4 | 136.52 | 67.86 | 204.38 | NOTE | |
| r-release-linux-x86_64 | 2.0.1 | 3.33 | 205.22 | 208.55 | OK | |
| r-release-macos-arm64 | 2.0.1 | 1.00 | 67.00 | 68.00 | OK | |
| r-release-macos-x86_64 | 2.0.1 | 3.00 | 195.00 | 198.00 | OK | |
| r-release-windows-x86_64 | 2.0.1 | 7.00 | 129.00 | 136.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | 1.00 | 29.00 | 30.00 | ERROR | |
| r-oldrel-macos-x86_64 | 2.0.1 | 3.00 | 199.00 | 202.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.1 | 8.00 | 166.00 | 174.00 | OK |
Version: 1.15.4
Check: compiled code
Result: NOTE
File ‘rEDM/libs/rEDM.so’:
Found ‘_ZSt4cout’, possibly from ‘std::cout’ (C++)
Objects: ‘cppEDM/lib/libEDM.a’, ‘cppEDM/src/libEDM.a’
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64
Version: 2.0.1
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0BPIeg’ ‘~/tmp/scratch/Rtmp0bVUcJ’
‘~/tmp/scratch/Rtmp0icKjX’ ‘~/tmp/scratch/Rtmp0kJCpX’
‘~/tmp/scratch/Rtmp1HjrxC’ ‘~/tmp/scratch/Rtmp1T3u1j’
‘~/tmp/scratch/Rtmp1dj1MW’ ‘~/tmp/scratch/Rtmp1sy1tB’
‘~/tmp/scratch/Rtmp2SEPpb’ ‘~/tmp/scratch/Rtmp3sWiSg’
‘~/tmp/scratch/Rtmp5ELUu0’ ‘~/tmp/scratch/Rtmp5XcDdD’
‘~/tmp/scratch/Rtmp5sIvGb’ ‘~/tmp/scratch/Rtmp6VwLUQ’
‘~/tmp/scratch/Rtmp6d8Q38’ ‘~/tmp/scratch/Rtmp6jW9wU’
‘~/tmp/scratch/Rtmp72BerG’ ‘~/tmp/scratch/Rtmp73CyLP’
‘~/tmp/scratch/Rtmp7W6ILo’ ‘~/tmp/scratch/Rtmp7tduTX’
‘~/tmp/scratch/Rtmp7wIW9e’ ‘~/tmp/scratch/Rtmp82mBqk’
‘~/tmp/scratch/Rtmp89D2yi’ ‘~/tmp/scratch/Rtmp8LDGB1’
‘~/tmp/scratch/Rtmp8MvMCi’ ‘~/tmp/scratch/Rtmp8X5JqP’
‘~/tmp/scratch/Rtmp8XINiF’ ‘~/tmp/scratch/Rtmp9AXsBd’
‘~/tmp/scratch/RtmpAKMrNt’ ‘~/tmp/scratch/RtmpAOJcnJ’
‘~/tmp/scratch/RtmpAQn8m6’ ‘~/tmp/scratch/RtmpAhJec1’
‘~/tmp/scratch/RtmpAzuNa0’ ‘~/tmp/scratch/RtmpB0ZK6U’
‘~/tmp/scratch/RtmpC4uKsH’ ‘~/tmp/scratch/RtmpC6jXog’
‘~/tmp/scratch/RtmpD6Hn0l’ ‘~/tmp/scratch/RtmpEZkD9l’
‘~/tmp/scratch/RtmpEc4xFu’ ‘~/tmp/scratch/RtmpFBWl7Y’
‘~/tmp/scratch/RtmpFoYDZt’ ‘~/tmp/scratch/RtmpGQYwhc’
‘~/tmp/scratch/RtmpGT5AL6’ ‘~/tmp/scratch/RtmpGYVb47’
‘~/tmp/scratch/RtmpGboxrG’ ‘~/tmp/scratch/RtmpGtWa2C’
‘~/tmp/scratch/RtmpHXeIRd’ ‘~/tmp/scratch/RtmpHcSQnK’
‘~/tmp/scratch/RtmpHe9PwZ’ ‘~/tmp/scratch/RtmpIAlX8a’
‘~/tmp/scratch/RtmpILQNQl’ ‘~/tmp/scratch/RtmpITgp2F’
‘~/tmp/scratch/RtmpJhY7if’ ‘~/tmp/scratch/RtmpLDHybR’
‘~/tmp/scratch/RtmpLIS5bi’ ‘~/tmp/scratch/RtmpLMk0tj’
‘~/tmp/scratch/RtmpLOWDbP’ ‘~/tmp/scratch/RtmpLXtvlW’
‘~/tmp/scratch/RtmpLwy7fW’ ‘~/tmp/scratch/RtmpM2JJxt’
‘~/tmp/scratch/RtmpMAiMlu’ ‘~/tmp/scratch/RtmpMJgZOy’
‘~/tmp/scratch/RtmpMTNuqy’ ‘~/tmp/scratch/RtmpNqe9hU’
‘~/tmp/scratch/RtmpOHm7mE’ ‘~/tmp/scratch/RtmpOJ73yP’
‘~/tmp/scratch/RtmpOT9GsE’ ‘~/tmp/scratch/RtmpOcvPg3’
‘~/tmp/scratch/RtmpPFYDkK’ ‘~/tmp/scratch/RtmpQ0fqp7’
‘~/tmp/scratch/RtmpQmefQO’ ‘~/tmp/scratch/RtmpR543OM’
‘~/tmp/scratch/RtmpR85XeQ’ ‘~/tmp/scratch/RtmpRHWqts’
‘~/tmp/scratch/RtmpTmBZzc’ ‘~/tmp/scratch/RtmpTsHZiv’
‘~/tmp/scratch/RtmpTy8Xi5’ ‘~/tmp/scratch/RtmpU4yX3J’
‘~/tmp/scratch/RtmpUJQJbb’ ‘~/tmp/scratch/RtmpUWbBsu’
‘~/tmp/scratch/RtmpUaglqf’ ‘~/tmp/scratch/RtmpUr8rKy’
‘~/tmp/scratch/RtmpV4Q4MF’ ‘~/tmp/scratch/RtmpVDaFb1’
‘~/tmp/scratch/RtmpVhohDe’ ‘~/tmp/scratch/RtmpVm9hKi’
‘~/tmp/scratch/RtmpWA3iIR’ ‘~/tmp/scratch/RtmpWKTLUg’
‘~/tmp/scratch/RtmpXNeIes’ ‘~/tmp/scratch/RtmpZLKYfL’
‘~/tmp/scratch/RtmpZxLsGc’ ‘~/tmp/scratch/RtmpaLXpE2’
‘~/tmp/scratch/RtmpakLLZb’ ‘~/tmp/scratch/RtmpavMbuQ’
‘~/tmp/scratch/Rtmpb6NKZK’ ‘~/tmp/scratch/RtmpcW7vEs’
‘~/tmp/scratch/RtmpctghAn’ ‘~/tmp/scratch/RtmpdM1jdU’
‘~/tmp/scratch/RtmpdSU2gI’ ‘~/tmp/scratch/RtmpdZ728E’
‘~/tmp/scratch/RtmpdnMyIe’ ‘~/tmp/scratch/RtmpeTjvL8’
‘~/tmp/scratch/RtmpemKrzF’ ‘~/tmp/scratch/RtmpfcnlwV’
‘~/tmp/scratch/RtmpfjRLDZ’ ‘~/tmp/scratch/RtmpfneTdQ’
‘~/tmp/scratch/RtmpfwbiAb’ ‘~/tmp/scratch/Rtmpgb0Vlz’
‘~/tmp/scratch/RtmpgfSOGV’ ‘~/tmp/scratch/RtmpgtNm4f’
‘~/tmp/scratch/Rtmpgv8v80’ ‘~/tmp/scratch/RtmpgwM9BN’
‘~/tmp/scratch/Rtmph8KxNo’ ‘~/tmp/scratch/RtmphJusZN’
‘~/tmp/scratch/RtmphNOBOC’ ‘~/tmp/scratch/RtmphkD0a5’
‘~/tmp/scratch/RtmpiTpkm9’ ‘~/tmp/scratch/Rtmpjbj45g’
‘~/tmp/scratch/Rtmpk866VJ’ ‘~/tmp/scratch/RtmplTc2FT’
‘~/tmp/scratch/Rtmplbh1qs’ ‘~/tmp/scratch/RtmpleLsmF’
‘~/tmp/scratch/RtmpmT8jh7’ ‘~/tmp/scratch/RtmpmafTpb’
‘~/tmp/scratch/RtmpmgCAer’ ‘~/tmp/scratch/RtmpmjlVlS’
‘~/tmp/scratch/RtmpmrBfdL’ ‘~/tmp/scratch/RtmpnU2ESx’
‘~/tmp/scratch/RtmpnWcA0W’ ‘~/tmp/scratch/Rtmpnd8oAK’
‘~/tmp/scratch/RtmpnliKvj’ ‘~/tmp/scratch/RtmpnpWi6O’
‘~/tmp/scratch/RtmpnpgwS1’ ‘~/tmp/scratch/Rtmpo3VXyu’
‘~/tmp/scratch/RtmpoDk9iq’ ‘~/tmp/scratch/RtmppJN3U4’
‘~/tmp/scratch/RtmppWd2FH’ ‘~/tmp/scratch/Rtmppdspmk’
‘~/tmp/scratch/Rtmppp639Y’ ‘~/tmp/scratch/RtmpqGZpPW’
‘~/tmp/scratch/RtmpqK3uTZ’ ‘~/tmp/scratch/RtmpqUMkFD’
‘~/tmp/scratch/Rtmpqdj2G9’ ‘~/tmp/scratch/Rtmpr0NZUR’
‘~/tmp/scratch/RtmprCPiV4’ ‘~/tmp/scratch/RtmprHVhTv’
‘~/tmp/scratch/RtmpreezZ3’ ‘~/tmp/scratch/RtmprtRreb’
‘~/tmp/scratch/Rtmps5qvpb’ ‘~/tmp/scratch/Rtmpt7vOH2’
‘~/tmp/scratch/RtmptKDeMS’ ‘~/tmp/scratch/RtmptTIIwC’
‘~/tmp/scratch/Rtmpur58lP’ ‘~/tmp/scratch/Rtmpv4pOVb’
‘~/tmp/scratch/RtmpvD3386’ ‘~/tmp/scratch/RtmpvMbXqo’
‘~/tmp/scratch/RtmpvWyqwG’ ‘~/tmp/scratch/RtmpvqL7eP’
‘~/tmp/scratch/Rtmpvtgynl’ ‘~/tmp/scratch/Rtmpvtt1rM’
‘~/tmp/scratch/RtmpwXjcCr’ ‘~/tmp/scratch/RtmpxUSrZc’
‘~/tmp/scratch/Rtmpy2ZXvW’ ‘~/tmp/scratch/RtmpylSGa7’
‘~/tmp/scratch/RtmpzAdRIB’ ‘~/tmp/scratch/RtmpzrOhwj’
‘~/tmp/scratch/Rtmpzz5Sg5’ ‘~/tmp/scratch/ccenLkF5.s’
‘~/tmp/scratch/xvfb-run.0hEtQ9’ ‘~/tmp/scratch/xvfb-run.1UZEKq’
‘~/tmp/scratch/xvfb-run.1cW9hn’ ‘~/tmp/scratch/xvfb-run.2v9L7h’
‘~/tmp/scratch/xvfb-run.3mEIpY’ ‘~/tmp/scratch/xvfb-run.3xCIbK’
‘~/tmp/scratch/xvfb-run.53TOzV’ ‘~/tmp/scratch/xvfb-run.598ajL’
‘~/tmp/scratch/xvfb-run.5J7WXj’ ‘~/tmp/scratch/xvfb-run.5LgLny’
‘~/tmp/scratch/xvfb-run.5hdseY’ ‘~/tmp/scratch/xvfb-run.7Wag1m’
‘~/tmp/scratch/xvfb-run.9VEK6z’ ‘~/tmp/scratch/xvfb-run.9jimUq’
‘~/tmp/scratch/xvfb-run.BYJC3R’ ‘~/tmp/scratch/xvfb-run.C2ldub’
‘~/tmp/scratch/xvfb-run.DEBxqg’ ‘~/tmp/scratch/xvfb-run.EYw8kr’
‘~/tmp/scratch/xvfb-run.GhIFYn’ ‘~/tmp/scratch/xvfb-run.GqhwfM’
‘~/tmp/scratch/xvfb-run.H2C1lj’ ‘~/tmp/scratch/xvfb-run.HEu0m0’
‘~/tmp/scratch/xvfb-run.IU2Cri’ ‘~/tmp/scratch/xvfb-run.KL61pj’
‘~/tmp/scratch/xvfb-run.KNhc42’ ‘~/tmp/scratch/xvfb-run.KOddtt’
‘~/tmp/scratch/xvfb-run.KQm1S7’ ‘~/tmp/scratch/xvfb-run.LtFUtN’
‘~/tmp/scratch/xvfb-run.MJ3F7Y’ ‘~/tmp/scratch/xvfb-run.Mibqa9’
‘~/tmp/scratch/xvfb-run.NAsVTt’ ‘~/tmp/scratch/xvfb-run.NRSRjH’
‘~/tmp/scratch/xvfb-run.NgwbaZ’ ‘~/tmp/scratch/xvfb-run.OyBf6M’
‘~/tmp/scratch/xvfb-run.Ph9RZw’ ‘~/tmp/scratch/xvfb-run.QLvg7x’
‘~/tmp/scratch/xvfb-run.RDpeby’ ‘~/tmp/scratch/xvfb-run.SSLmGg’
‘~/tmp/scratch/xvfb-run.URRvUf’ ‘~/tmp/scratch/xvfb-run.UV1kU7’
‘~/tmp/scratch/xvfb-run.VLeDVd’ ‘~/tmp/scratch/xvfb-run.VoAWVV’
‘~/tmp/scratch/xvfb-run.W7MvOi’ ‘~/tmp/scratch/xvfb-run.WFWJYu’
‘~/tmp/scratch/xvfb-run.Z27cHg’ ‘~/tmp/scratch/xvfb-run.a6Awqo’
‘~/tmp/scratch/xvfb-run.aGcqBb’ ‘~/tmp/scratch/xvfb-run.bGkELW’
‘~/tmp/scratch/xvfb-run.eHWkkt’ ‘~/tmp/scratch/xvfb-run.fkQaDz’
‘~/tmp/scratch/xvfb-run.fuodJp’ ‘~/tmp/scratch/xvfb-run.gMCu5J’
‘~/tmp/scratch/xvfb-run.ge5oCM’ ‘~/tmp/scratch/xvfb-run.hCJekF’
‘~/tmp/scratch/xvfb-run.iInUtD’ ‘~/tmp/scratch/xvfb-run.jZYiOM’
‘~/tmp/scratch/xvfb-run.jee8fb’ ‘~/tmp/scratch/xvfb-run.jjPrDA’
‘~/tmp/scratch/xvfb-run.kd7R5c’ ‘~/tmp/scratch/xvfb-run.lahFym’
‘~/tmp/scratch/xvfb-run.mtNIEl’ ‘~/tmp/scratch/xvfb-run.nYedon’
‘~/tmp/scratch/xvfb-run.nlWinY’ ‘~/tmp/scratch/xvfb-run.obVIkT’
‘~/tmp/scratch/xvfb-run.rCxY3b’ ‘~/tmp/scratch/xvfb-run.rhOyFS’
‘~/tmp/scratch/xvfb-run.ryTHeV’ ‘~/tmp/scratch/xvfb-run.tHPoTN’
‘~/tmp/scratch/xvfb-run.tOIcNy’ ‘~/tmp/scratch/xvfb-run.tUQR2J’
‘~/tmp/scratch/xvfb-run.tsJ7eo’ ‘~/tmp/scratch/xvfb-run.tw1CMW’
‘~/tmp/scratch/xvfb-run.ulfTww’ ‘~/tmp/scratch/xvfb-run.vgNCXu’
‘~/tmp/scratch/xvfb-run.x7rhWX’ ‘~/tmp/scratch/xvfb-run.xaeWAJ’
‘~/tmp/scratch/xvfb-run.yF56Cm’ ‘~/tmp/scratch/xvfb-run.yay1HP’
‘~/tmp/scratch/xvfb-run.ys0Mmq’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.15.4
Check: compiled code
Result: NOTE
File 'rEDM/libs/x64/rEDM.dll':
Found '_ZSt4cout', possibly from 'std::cout' (C++)
Objects: 'cppEDM/lib/libEDM.a', 'cppEDM/src/libEDM.a'
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-x86_64
Version: 2.0.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘rEDM-tutorial.Rmd’ using rmarkdown
2026-08-03 06:31:51.785 R[47927:70724] XType: Using static font registry.
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
*** caught segfault ***
address 0x110, cause 'invalid permissions'
Traceback:
1: RowCumsum(valid)
2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, verbose = verbose)
3: SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
4: ComputeError(predictions$Observations, predictions$Predictions)
5: SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)$predictions)
6: FUN(X[[i]], ...)
7: lapply(X = S, FUN = FUN, ...)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) if (!silent && isTRUE(getOption("show.error.messages"))) { cat(msg, file = outFile) .Internal(printDeferredWarnings()) } invisible(structure(msg, class = "try-error", condition = e))})
12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
Traceback:
1:
Traceback:
1: RowCumsum(valid)RowCumsum(valid)13:
2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, verbose = verbose)
3:
SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE)) tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
4:
ComputeError(predictions$Observations, predictions$Predictions)14: 2: FUN(X[[i]], ...)
5: SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)$predictions)
15: lapply(seq_len(cores), inner.do)
FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, validLib = validLib, libOverlap = idx$libOverlap, backend = backend, verbose = verbose)
3: SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)
16: 4: ComputeError(predictions$Observations, predictions$Predictions)parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)
17: doTryCatch(return(expr), name, parentenv, handler)
18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
19: tryCatchList(expr, classes, parentenv, handlers)
5: SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius,
20: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, embedded = embedded, validLib = validLib, noTime = noTime, ignoreNan = ignoreNan, backend = backend)$predictions)
6: FUN(X[[i]], ...) 6: FUN(X[[i]], ...)
7: lapply(X = S, FUN = FUN, ...)
8: mc.preschedule = TRUE), error = function(e) NULL)
21: SweepApply(theta, worker, numProcess)
doTryCatch(return(expr), name, parentenv, handler)
7: lapply(X = S, FUN = FUN, ...)
8: doTryCatch(return(expr), name, parentenv, handler)
22: unlist(SweepApply(theta, worker, numProcess)) 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: 9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11:
23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", target = "Thrips_imaginis", lib = "1 73", pred = "1 73", E = E, showPlot = TRUE)
tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L)tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) {24: if (identical(call[[1L]], quote(doTryCatch))) eval(expr, envir) call <- sys.call(-4L)
prefix <- paste("Error in", dcall, ": ")25: eval(expr, envir)
26: withVisible(eval(expr, envir))
27: dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) withCallingHandlers(code, error = function (e)
Traceback:
rlang::entrace(e), message = function (cnd) 1: LONG <- 75L w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], sm <- strsplit(conditionMessage(e), "\n")[[1L]] type = "b")RowCumsum(valid){
watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) if (w > LONG) 2: FindNeighbors(embedding, lib_i, pred_i, knn, exclusionRadius = exclusionRadius, w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") } validLib = validLib, libOverlap = idx$libOverlap, backend = backend, if (is.na(w)) verbose = verbose)
if (on_message$silence) { 3: invokeRestart("muffleMessage") }}, warning = function (cnd) {SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, knn = knn, if (getOption("warn") >= 2 || getOption("warn") < 0) { w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], return() prefix <- paste0(prefix, "\n ") } watcher$capture_plot_and_output() type = "b") } if (w > LONG) tau = tau, theta = th, exclusionRadius = exclusionRadius, prefix <- paste0(prefix, "\n ") embedded = embedded, validLib = validLib, noTime = noTime, if (on_warning$capture) { } ignoreNan = ignoreNan, backend = backend)
4: ComputeError(predictions$Observations, predictions$Predictions)
cnd <- sanitize_call(cnd) else prefix <- "Error : " else prefix <- "Error : " watcher$push(cnd) msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) msg <- paste0(prefix, conditionMessage(e), "\n") .Internal(seterrmessage(msg[1L])) } if (!silent && isTRUE(getOption("show.error.messages"))) { if (on_warning$silence) { invokeRestart("muffleWarning") } if (!silent && isTRUE(getOption("show.error.messages"))) { 5: cat(msg, file = outFile)}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)SweepRho(SMap(dataFrame, columns, target, lib, pred, E = E, Tp = Tp, }) knn = knn, tau = tau, theta = th, exclusionRadius = exclusionRadius, embedded = embedded, validLib = validLib, noTime = noTime,
cat(msg, file = outFile) .Internal(printDeferredWarnings())28: ignoreNan = ignoreNan, backend = backend)$predictions) }
6: .Internal(printDeferredWarnings())FUN(X[[i]], ...) } invisible(structure(msg, class = "try-error", condition = e))})
12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))eval(call)
14: FUN(X[[i]], ...)
invisible(structure(msg, class = "try-error", condition = e))
}) 7: 15: lapply(X = S, FUN = FUN, ...)lapply(seq_len(cores), inner.do)
16: parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)
17: doTryCatch(return(expr), name, parentenv, handler)
18: tryCatchOne(expr, names, parentenv, handlers[[1L]])
19: tryCatchList(expr, classes, parentenv, handlers)
20: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE), error = function(e) NULL)
21: SweepApply(theta, worker, numProcess)
22: unlist(SweepApply(theta, worker, numProcess))
23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", target = "Thrips_imaginis", lib = "1 73", pred = "1 73", E = E, showPlot = TRUE)
24: eval(expr, envir)
25: eval(expr, envir)
26: 29:
8: 12: try(lapply(X = S, FUN = FUN, ...), silent = TRUE)
13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))eval(call)
30: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers)
31: doWithOneRestart(return(expr), restart)
32: withOneRestart(expr, restarts[[1L]])
33:
14: withVisible(eval(expr, envir))FUN(X[[i]], ...)
doTryCatch(return(expr), name, parentenv, handler)
withRestartList(expr, restarts[-nr])27:
34: doWithOneRestart(return(expr), restart)15:
lapply(seq_len(cores), inner.do)
withCallingHandlers(code, error = function (e)
9: rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
28: eval(call)
16: 29: 35: parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)eval(call)tryCatchOne(expr, names, parentenv, handlers[[1L]])
withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
36: 17: withRestartList(expr, restarts)doTryCatch(return(expr), name, parentenv, handler)
18: 10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(expr, error = function(e) {
call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L)tryCatchOne(expr, names, parentenv, handlers[[1L]])30: 37: with_handlers({ prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") for (expr in tle$exprs) {withRestarts(with_handlers({ } else prefix <- "Error : " ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() msg <- paste0(prefix, conditionMessage(e), "\n") for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) .Internal(seterrmessage(msg[1L])) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }
TRUE if (!silent && isTRUE(getOption("show.error.messages"))) {}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)19:
tryCatchList(expr, classes, parentenv, handlers)
20: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE), error = function(e) NULL)
cat(msg, file = outFile)38: 21: SweepApply(theta, worker, numProcess)
watcher$print_value(ev$value, ev$visible, envir)evaluate::evaluate(...) } .Internal(printDeferredWarnings()) TRUE22: }unlist(SweepApply(theta, worker, numProcess))}, handlers) invisible(structure(msg, class = "try-error", condition = e))
39: })31:
12: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, try(lapply(X = S, FUN = FUN, ...), silent = TRUE)doWithOneRestart(return(expr), restart)
23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", 32: keep_message = if (is.numeric(options$message)) TRUE else options$message, target = "Thrips_imaginis", lib = "1 73", pred = "1 73",
stop_on_error = if (is.numeric(options$error)) options$error else {withOneRestart(expr, restarts[[1L]]) E = E, showPlot = TRUE)
13: sendMaster(try(lapply(X = S, FUN = FUN, ...), silent = TRUE))
24: 33: 14: FUN(X[[i]], ...)
15: lapply(seq_len(cores), inner.do)eval(expr, envir)
25: eval(expr, envir) if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
16: parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE)
26: 40: in_dir(input_dir(), expr)
41: in_input_dir(evaluate(code, envir = env, new_device = FALSE, 17: keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, doTryCatch(return(expr), name, parentenv, handler)withRestartList(expr, restarts[-nr])
keep_message = if (is.numeric(options$message)) TRUE else options$message, 18: stop_on_error = if (is.numeric(options$error)) options$error else {
34: doWithOneRestart(return(expr), restart) if (options$error && options$include) tryCatchOne(expr, names, parentenv, handlers[[1L]])
19:
withVisible(eval(expr, envir)) 0L
27: withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) 35: { else 2L }, output_handler = knit_handlers(options$render, options)))
watcher$capture_plot_and_output()42: eng_r(options)
43: block_exec(params)tryCatchList(expr, classes, parentenv, handlers)
44: call_block(x)
45: process_group(group)
46: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
if (on_message$capture) { watcher$push(cnd) }47: 20: tryCatch(parallel::mclapply(values, worker, mc.cores = cores, mc.preschedule = TRUE), error = function(e) NULL)
21: SweepApply(theta, worker, numProcess)withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), if (on_message$silence) {
invokeRestart("muffleMessage") }22: unlist(SweepApply(theta, worker, numProcess))
}, warning = function (cnd) 36: withRestartList(expr, restarts)
37: withRestarts(with_handlers({23: PredictNonlinear(dataFrame = Thrips, columns = "Thrips_imaginis", target = "Thrips_imaginis", lib = "1 73", pred = "1 73", E = E, showPlot = TRUE) for (expr in tle$exprs) { error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) {
setwd(wd) ev <- withVisible(eval(expr, envir)) write_utf8(res, output %n% stdout()) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) }24: eval(expr, envir)
25: eval(expr, envir)
26: paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
TRUE{ if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
28: eval(call)}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)49: withVisible(eval(expr, envir))
38: evaluate::evaluate(...)
39: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include)
29: 0Leval(call) else 2Lprocess_file(text, output)
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
51: 27: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(),
output_dir = getwd(), ...) }, output_handler = knit_handlers(options$render, options))30:
withCallingHandlers(code, error = function (e) rlang::entrace(e), message = function (cnd) { watcher$capture_plot_and_output()40: if (on_message$capture) {in_dir(input_dir(), expr)
52: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output()41: watcher$push(cnd)vweave_rmarkdown(...)
watcher$print_value(ev$value, ev$visible, envir)in_input_dir(evaluate(code, envir = env, new_device = FALSE, } TRUE keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, }}, handlers)
31: keep_message = if (is.numeric(options$message)) TRUE else options$message, 53: stop_on_error = if (is.numeric(options$error)) options$error else { if (on_message$silence) {doWithOneRestart(return(expr), restart)
invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }32: if (options$error && options$include) }, error = function (cnd) 0LwithOneRestart(expr, restarts[[1L]]) else 2L }, output_handler = knit_handlers(options$render, options)))
33: 42: eng_r(options)withRestartList(expr, restarts[-nr]){
watcher$capture_plot_and_output()43: cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = NULL)})
28: eval(call)
29: eval(call)
30: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir)
34: block_exec(params) } TRUE}, handlers)
31: engine$weave(file, quiet = quiet, encoding = enc)44: call_block(x)
doWithOneRestart(return(expr), restart)
32: withOneRestart(expr, restarts[[1L]])
54: doTryCatch(return(expr), name, parentenv, handler)
55: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
57: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc)
setwd(startdir)doWithOneRestart(return(expr), restart) output <- find_vignette_product(name, by = "weave", engine = engine)45: if (!have.makefile && vignette_is_tex(output)) {process_group(group) texi2pdf(file = output, clean = FALSE, quiet = quiet)
46: 33: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) {
if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
47: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) withRestartList(expr, restarts[-nr]) output <- find_vignette_product(name, by = "texi2pdf",
pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())) engine = engine)34: doWithOneRestart(return(expr), restart)
35: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
35: 58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])
skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/RtmpJjmlqv/file7ed438a84c44.rds")
An irrecoverable exception occurred. R is aborting now ...
36: withRestartList(expr, restarts)48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout())
36: withRestartList(expr, restarts)37: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
37: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
49: process_file(text, output) watcher$print_value(ev$value, ev$visible, envir)
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
} TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE)
38: 38: evaluate::evaluate(...)
39: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {evaluate::evaluate(...) if (options$error && options$include)
0L else 2L }, output_handler = knit_handlers(options$render, options))
39: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {40: in_dir(input_dir(), expr) if (options$error && options$include) 0L else 2L
}, output_handler = knit_handlers(options$render, options))41: 51: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
52: vweave_rmarkdown(...)in_input_dir(evaluate(code, envir = env, new_device = FALSE,
53: engine$weave(file, quiet = quiet, encoding = enc)
54: doTryCatch(return(expr), name, parentenv, handler)
55: keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L40: in_dir(input_dir(), expr)
41: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else {tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
57: tryCatch({ else 2L engine$weave(file, quiet = quiet, encoding = enc) }, output_handler = knit_handlers(options$render, options))) if (options$error && options$include) 0L
42: eng_r(options) else 2L }, output_handler = knit_handlers(options$render, options)))
42: eng_r(options)
43: block_exec(params)
44: setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) {
43: block_exec(params)
44: call_block(x)
call_block(x)
45: 45: process_group(group) texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", process_group(group) engine = engine)
46: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), } error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
47: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))
48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
46: 58: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
49: process_file(text, output)
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt()
51: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/RtmpJjmlqv/file7ed438a84c44.rds")52: vweave_rmarkdown(...)
53: engine$weave(file, quiet = quiet, encoding = enc)
54: doTryCatch(return(expr), name, parentenv, handler)
55:
An irrecoverable exception occurred. R is aborting now ...
if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) })
47: with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global()))tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
48: xfun:::handle_error(with_options(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { if (progress && is.function(pb$interrupt)) pb$interrupt() if (is_R_CMD_build() || is_R_CMD_check()) error <<- format(e) }), list(rlang_trace_top_env = knit_global())), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from ", loc, if (!is.null(error)) paste0("\n", rule(), error, "\n", rule()))}, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
57: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)49: process_file(text, output)
}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/RtmpJjmlqv/file7ed438a84c44.rds")
An irrecoverable exception occurred. R is aborting now ...
50: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
51: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
52: vweave_rmarkdown(...)
53: engine$weave(file, quiet = quiet, encoding = enc)
54: doTryCatch(return(expr), name, parentenv, handler)
55: tryCatchOne(expr, names, parentenv, handlers[[1L]])
56: tryCatchList(expr, classes, parentenv, handlers)
57: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
58: tools::buildVignettes(dir = "/Volumes/Builds/packages/big-sur-arm64/results/4.5/rEDM.Rcheck/vign_test/rEDM", skip = TRUE, ser_elibs = "/Volumes/Temp/tmp/RtmpJjmlqv/file7ed438a84c44.rds")
An irrecoverable exception occurred. R is aborting now ...
Quitting from rEDM-tutorial.Rmd:466-469 [smap_thrips]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `data.frame()`:
! arguments imply differing number of rows: 15, 0
---
Backtrace:
▆
1. └─rEDM::PredictNonlinear(...)
2. └─base::data.frame(Theta = theta, rho = rho)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'rEDM-tutorial.Rmd' failed with diagnostics:
arguments imply differing number of rows: 15, 0
--- failed re-building ‘rEDM-tutorial.Rmd’
SUMMARY: processing the following file failed:
‘rEDM-tutorial.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-arm64