Last updated on 2026-10-24 01:51:46 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.3 | 13.70 | 139.93 | 153.63 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.3 | 10.36 | 100.24 | 110.60 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.3 | 12.00 | 120.00 | 132.00 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.2.3 | 108.10 | OK | |||
| r-devel-windows-x86_64 | 1.2.3 | 17.00 | 155.00 | 172.00 | OK | |
| r-patched-linux-x86_64 | 1.2.3 | 13.08 | 130.71 | 143.79 | OK | |
| r-release-linux-x86_64 | 1.2.3 | 12.86 | 129.36 | 142.22 | OK | |
| r-release-macos-arm64 | 1.2.3 | 4.00 | 39.00 | 43.00 | OK | |
| r-release-macos-x86_64 | 1.2.3 | 10.00 | 133.00 | 143.00 | OK | |
| r-release-windows-x86_64 | 1.2.3 | 15.00 | 144.00 | 159.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.3 | OK | ||||
| r-oldrel-macos-x86_64 | 1.2.3 | 8.00 | 122.00 | 130.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.3 | 21.00 | 180.00 | 201.00 | OK |
Version: 1.2.3
Check: examples
Result: ERROR
Running examples in ‘shrink-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: predict.shrink
> ### Title: Predict Method for Objects of Class 'shrink'
> ### Aliases: predict.shrink
>
> ### ** Examples
>
> data("GBSG")
> library("mfp")
Loading required package: survival
>
> fit <- mfp(Surv(rfst, cens) ~ fp(age, df = 4, select = 0.05) +
+ fp(prm, df = 4, select = 0.05), family = cox, data = GBSG)
>
> dfbeta.global <- shrink(fit, type = "global", method = "dfbeta")
> dfbeta.pw <- shrink(fit, type = "parameterwise", method = "dfbeta")
> dfbeta.join <- shrink(fit, type = "parameterwise", method = "dfbeta",
+ join=list(c("age.1", "age.2")))
>
> age <- 30:80
> newdat <- data.frame(age = age, prm = 0)
> refdat <- data.frame(age = 50, prm = 0)
>
> # unshrunken
> plot(age, predict(fit, newdata = newdat, type = "lp") -
+ predict(fit, newdata = refdat, type = "lp"), xlab = "Age",
+ ylab = "Log hazard relative to 50 years", type = "l", lwd = 2)
Error in a$specials[[i]] : subscript out of bounds
Calls: plot ... predict.mfp -> <Anonymous> -> delete.response -> off
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘JSSexample.Rmd’ using rmarkdown
Quitting from JSSexample.Rmd:280-413 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
▆
1. ├─graphics::lines(...)
2. ├─graphics::lines.default(...)
3. │ ├─graphics::plot.xy(xy.coords(x, y), type = type, ...)
4. │ └─grDevices::xy.coords(x, y)
5. ├─stats::predict(fitg, newdata = newdat, type = "lp")
6. ├─stats::predict(fitg, newdata = newdat, type = "lp")
7. └─mfp:::predict.mfp(fitg, newdata = newdat, type = "lp")
8. └─getFromNamespace("predict.coxph", "survival")(...)
9. └─stats::delete.response(Terms)
10. └─stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'JSSexample.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘JSSexample.Rmd’
SUMMARY: processing the following file failed:
‘JSSexample.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc