DAISIEprep: Extracts Phylogenetic Island Community Data from Phylogenetic Trees
Extracts colonisation and branching times of island species to be used for analysis in the R package 'DAISIE'. It uses phylogenetic and endemicity data to extract the separate island colonists and store them.
| Version: | 1.0.0 |
| Depends: | R (≥ 4.0) |
| Imports: | methods, ape, phylobase, ggplot2, scales, ggtree, DAISIE, castor, tibble, rlang |
| Suggests: | testthat (≥ 3.0.0), knitr, rmarkdown, covr, diversitree, corHMM, tidyr, dplyr, ggimage |
| Published: | 2024-12-18 |
| DOI: | 10.32614/CRAN.package.DAISIEprep |
| Author: | Joshua W. Lambert 
[aut, cre],
Luis Valente
[aut],
Pedro Santos Neves
[aut],
Lizzie Roeble
[aut],
Theo Pannetier
[aut] |
| Maintainer: | Joshua W. Lambert <j.w.l.lambert at rug.nl> |
| BugReports: | https://github.com/joshwlambert/DAISIEprep/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/joshwlambert/DAISIEprep, https://joshwlambert.github.io/DAISIEprep/ |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| CRAN checks: | DAISIEprep results [issues need fixing before 2025-10-31] |
Documentation:
| Reference manual: | DAISIEprep.html , DAISIEprep.pdf |
| Vignettes: |
Forcing non-endemic singletons: solutions and limitations (source, R code) Extracting species with multiple tips in the phylogeny (source, R code) Performance (source, R code) Sensitivity (source, R code) DAISIEprep Tutorial (source, R code) |
Downloads:
| Package source: | DAISIEprep_1.0.0.tar.gz |
| Windows binaries: | r-devel: DAISIEprep_1.0.0.zip, r-release: DAISIEprep_1.0.0.zip, r-oldrel: DAISIEprep_1.0.0.zip |
| macOS binaries: | r-release (arm64): DAISIEprep_1.0.0.tgz, r-oldrel (arm64): DAISIEprep_1.0.0.tgz, r-release (x86_64): DAISIEprep_1.0.0.tgz, r-oldrel (x86_64): DAISIEprep_1.0.0.tgz |
| Old sources: | DAISIEprep archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=DAISIEprep to link to this page.