Provides a comprehensive suite of tools for analyzing omics data. It includes functionalities for alpha diversity analysis, beta
diversity analysis, differential abundance analysis, community assembly analysis, visualization of phylogenetic tree, and
functional enrichment analysis. With a progressive approach, the package offers a range of analysis methods to explore and
understand the complex communities. It is designed to support researchers and practitioners in conducting in-depth and
professional omics data analysis.
| Version: |
0.1.3 |
| Depends: |
R (≥ 4.2.0) |
| Imports: |
pcutils (≥ 0.2.5), dplyr, ggplot2 (≥ 3.2.0), vegan, magrittr, grDevices, RColorBrewer, ggrepel, reshape2, stats, tibble, utils, ggpubr, ggnewscale, ade4, scales |
| Suggests: |
picante, httr, NST, permute, aplot, pheatmap, MASS, Rtsne, mixOmics, geosphere, phyloseq, phyloseqGraphTest, plotly, umap, Hmisc, minpack.lm, bbmle, snow, foreach, doSNOW, patchwork, tidytree, ggtree, ggtreeExtra, vctrs, zoo, ape, DESeq2, limma, ALDEx2, Mfuzz, edgeR, methods, randomForest, knitr, rmarkdown, MetaNet, showtext, jsonlite, prettydoc, readxl, clipr, zetadiv, ggforce |
| Published: |
2024-12-02 |
| DOI: |
10.32614/CRAN.package.pctax |
| Author: |
Chen Peng  [aut,
cre] |
| Maintainer: |
Chen Peng <pengchen2001 at zju.edu.cn> |
| BugReports: |
https://github.com/Asa12138/pctax/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/Asa12138/pctax |
| NeedsCompilation: |
no |
| Citation: |
pctax citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
pctax results |