statgenGWAS: Genome Wide Association Studies

Fast single trait Genome Wide Association Studies (GWAS) following the method described in Kang et al. (2010), <doi:10.1038/ng.548>. One of a series of statistical genetic packages for streamlining the analysis of typical plant breeding experiments developed by Biometris.

Version: 1.0.12
Depends: R (≥ 3.6)
Imports: data.table, ggplot2 (≥ 3.0.0), LMMsolver, methods, rlang, Rcpp, sommer (≥ 4.4.1)
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, officer, tinytest, snpStats, vcfR
Published: 2025-07-01
DOI: 10.32614/CRAN.package.statgenGWAS
Author: Bart-Jan van Rossum ORCID iD [aut, cre], Willem Kruijer ORCID iD [aut], Fred van Eeuwijk ORCID iD [ctb], Martin Boer ORCID iD [ctb], Marcos Malosetti ORCID iD [ctb], Daniela Bustos-Korts ORCID iD [ctb], Emilie Millet ORCID iD [ctb], Joao Paulo ORCID iD [ctb], Maikel Verouden ORCID iD [ctb], Ron Wehrens ORCID iD [ctb], Choazhi Zheng ORCID iD [ctb]
Maintainer: Bart-Jan van Rossum <bart-jan.vanrossum at wur.nl>
BugReports: https://github.com/Biometris/statgenGWAS/issues
License: GPL-3
URL: https://biometris.github.io/statgenGWAS/index.html, https://github.com/Biometris/statgenGWAS/
NeedsCompilation: yes
Materials: README, NEWS
In views: Agriculture
CRAN checks: statgenGWAS results

Documentation:

Reference manual: statgenGWAS.html , statgenGWAS.pdf
Vignettes: Introduction to the statgenGWAS package (source, R code)

Downloads:

Package source: statgenGWAS_1.0.12.tar.gz
Windows binaries: r-devel: statgenGWAS_1.0.12.zip, r-release: statgenGWAS_1.0.12.zip, r-oldrel: statgenGWAS_1.0.12.zip
macOS binaries: r-release (arm64): statgenGWAS_1.0.12.tgz, r-oldrel (arm64): statgenGWAS_1.0.12.tgz, r-release (x86_64): statgenGWAS_1.0.12.tgz, r-oldrel (x86_64): statgenGWAS_1.0.12.tgz
Old sources: statgenGWAS archive

Reverse dependencies:

Reverse depends: statgenMPP
Reverse imports: statgenIBD, statgenQTLxT

Linking:

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